PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539392.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HRT-like

Protein Properties

Length: 489aa MW: 54703.2 Da PI: 9.0672

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.5	4.6e-18	283	313	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil+dG+ C+++PvkgRKRC eHKG Ri XP_010539392.1 283 VCGVILKDGTSCTKTPVKGRKRCTEHKGERI 313 7****************************97 PP
2	HRT-like	56.6	4.4e-18	342	372	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil dG +C++ Pv gRKRCe HKGmRi XP_010539392.1 342 TCGVILVDGETCSNRPVSGRKRCESHKGMRI 372 7*****************************7 PP
3	HRT-like	32.4	1.6e-10	410	436	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C +i++ Gs+C+r+P kg RC++HK XP_010539392.1 410 CEAITKSGSPCTRSPSKGSRRCWQHKE 436 99************************7 PP
4	HRT-like	60.6	2.4e-19	457	487	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l dGsvC+ +PvkgRKRCe HKGmRi XP_010539392.1 457 TCGVKLYDGSVCEGSPVKGRKRCELHKGMRI 487 7*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MEFGDGFPFA VVDAMFKRED YKQTKHDPIF TKWQVLIGSN DWEDFRNGKD GATRYRVQNL 60 PCKSCPGLYE LGVGIIGHDQ ARQVDSHDVL VAYLGQAESV RSRLQCYGRS GAHLKNVNLT 120 CDNNGCELDE SLDRKAVTAG LFEDIFSKGG SILYRWAPMK SKREAEVKEV LLLGTFDYAW 180 NKGSNGERRH QDLLEKLGHH KFMSKRTERF PWMHVFSFAK DHVGVKIKGE KHILAEEREL 240 KGDTEKEKKS SNLLSGILKL SRNRPQPVSD TSDNVVGADS GPVCGVILKD GTSCTKTPVK 300 GRKRCTEHKG ERICRVSPKP SPEKHKMCEV SPGKNHQESD ITCGVILVDG ETCSNRPVSG 360 RKRCESHKGM RINAFLFLLN HAEREKNILD QKSSPGKCSE LNQKSDSLFC EAITKSGSPC 420 TRSPSKGSRR CWQHKERMSK DETSPENISP AGVNQVTCGV KLYDGSVCEG SPVKGRKRCE 480 LHKGMRITS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MEFGDGFPFA VVDAMFKRED YKQTKHDPIF TKWQVLIGSN DWEDFRNGKD GATRYRVQNL  60
PCKSCPGLYE LGVGIIGHDQ ARQVDSHDVL VAYLGQAESV RSRLQCYGRS GAHLKNVNLT  120
CDNNGCELDE SLDRKAVTAG LFEDIFSKGG SILYRWAPMK SKREAEVKEV LLLGTFDYAW  180
NKGSNGERRH QDLLEKLGHH KFMSKRTERF PWMHVFSFAK DHVGVKIKGE KHILAEEREL  240
KGDTEKEKKS SNLLSGILKL SRNRPQPVSD TSDNVVGADS GPVCGVILKD GTSCTKTPVK  300
GRKRCTEHKG ERICRVSPKP SPEKHKMCEV SPGKNHQESD ITCGVILVDG ETCSNRPVSG  360
RKRCESHKGM RINAFLFLLN HAEREKNILD QKSSPGKCSE LNQKSDSLFC EAITKSGSPC  420
TRSPSKGSRR CWQHKERMSK DETSPENISP AGVNQVTCGV KLYDGSVCEG SPVKGRKRCE  480
LHKGMRITS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539392.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539392.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A178URY3	0.0	A0A178URY3_ARATH; ET2
STRING	XP_010539392.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2