PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539367.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 668aa    MW: 72566.6 Da    PI: 4.9442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-32270327260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Ct+++C v+kkvers+ +++v+ei+Y+g Hnh+k
  XP_010539367.1 270 EDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCLVTKKVERSR-EGHVTEIIYKGAHNHPK 327
                     8****************************************.***************85 PP
2WRKY99.61.9e-31474532159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver+++d k v++ Y g+Hnh+
  XP_010539367.1 474 LDDGYRWRKYGQKVVKGNPNPRSYYKCTGPGCLVRKHVERASHDFKSVITSYDGKHNHD 532
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.433264328IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-28267328IPR003657WRKY domain
SuperFamilySSF1182901.44E-25267328IPR003657WRKY domain
SMARTSM007741.0E-35269327IPR003657WRKY domain
PfamPF031062.1E-24270326IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-35459534IPR003657WRKY domain
SuperFamilySSF1182902.88E-27466534IPR003657WRKY domain
PROSITE profilePS5081137.459469534IPR003657WRKY domain
SMARTSM007743.5E-35474533IPR003657WRKY domain
PfamPF031064.5E-23475532IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MTGFDDNVAV MDEWLPSSPN PRAIFTAMSG QEENSKPVLE IELSLNHGYV KEDCLQSNNL  60
PFGEEKPGLG ERIASRAGGF NAPKLNTDNI PSPCLTISSP GLSPATLLES PVFLSNPLAP  120
TSPTTGKFSF FPGGSSYMSP SDPSDKTKDE LFDDIDASFT FHPVSRSSSS IIPGNTASVC  180
HVSQQSFPST EISINYGNCN NSQTVEGVEL GSQDVETVNL HGKFPGTSAE IHNSGKDVDP  240
GEVRTLDDAQ DEEQRRKGGD LVVAGGAPAE DGYNWRKYGQ KLVKGSEYPR SYYKCTHPNC  300
LVTKKVERSR EGHVTEIIYK GAHNHPKPPP NRRAAAIGSS GTSLLDLQID GTEQSEQQQS  360
SMGRDDSPWL VAQQAGTNNE NGEETSPDST TGFESGQMQV HGGTHRYDDD DDDDDGANDE  420
DEDDDHVMHG SEGDETEPKR RKLEEAYAEE MSGATRAIRE PRVVVQTTSD VDILDDGYRW  480
RKYGQKVVKG NPNPRSYYKC TGPGCLVRKH VERASHDFKS VITSYDGKHN HDVPMARNSS  540
NHGGSGGSSA QTQVHQPEPR SRFERPVTSN PTFVRPFSFQ PRLGPPPPGG FSFACLGQTG  600
LHNLAMPSFP VHPYMAGTSQ QAVGEPGLMM LPTRSTDPKV EPVSDTGLVG LSGSSSIYRQ  660
FMSRLPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34270534877Probable WRKY transcription factor 4
2lex_A2e-34270534877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539365.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_010539366.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_010539367.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1J3CZN80.0A0A1J3CZN8_NOCCA; Putative WRKY transcription factor 2
STRINGXP_010539365.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]