PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539166.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 229aa    MW: 26395.9 Da    PI: 4.8075
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.93e-244997149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i+++ +rqvtfskRr g++KKA ELSvLCd+++a+i fs  g++y++
  XP_010539166.1 49 KEIKEEAKRQVTFSKRRRGLFKKAAELSVLCDTKIAIITFSRCGRIYTF 97
                    6799********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-2441100IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.8941101IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-2242104IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-214363IPR002100Transcription factor, MADS-box
PfamPF003192.8E-225197IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-216378IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-217899IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEQGGEASTF TCMFPMEQQQ LLNPNLLLKK NPEKTKNPKT RGRQRIEIKE IKEEAKRQVT  60
FSKRRRGLFK KAAELSVLCD TKIAIITFSR CGRIYTFGDV ETLTERYLHG EKKIVPARLG  120
EYSGGGDAYV EAEEQRWWEM PVENVAAEEM EEYLAAMTEL RENVRGRIYQ MSCDRAVENP  180
SEQNPTVEII ESKQTVDDLS LEYLTAEDNR GDGLFLQQFL AENMMYTAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539166.11e-171PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A078IML83e-51A0A078IML8_BRANA; BnaC06g24370D protein
TrEMBLA0A0D3CX453e-51A0A0D3CX45_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QC053e-51A0A3N6QC05_BRACR; Uncharacterized protein
TrEMBLA0A3P6BWN24e-51A0A3P6BWN2_BRACM; Uncharacterized protein
TrEMBLA0A3P6FXM63e-51A0A3P6FXM6_BRAOL; Uncharacterized protein
TrEMBLM4CI514e-51M4CI51_BRARP; Uncharacterized protein
STRINGXP_010539166.11e-170(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-35M-type_MADS family protein