PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539045.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

BBR-BPC

Protein Properties

Length: 314aa MW: 35081.9 Da PI: 9.5379

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	383.7	3e-117	2	314	26	301
GAGA_bind 26 lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqls 115 +q+m++iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erdn+l+al+++e s++ s++ +g+q+++g+k++++ qq++ XP_010539045.1 2 KQVMAIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAVMERDNALVALQYRESSMVttatmSSCTAGCQISHGVKHMHHPQQHH 96 69************************************************************9999999999*************9988 PP GAGA_bind 116 e........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader................ 186 + +q++++a++ re e ++alp++ + + e++k+k+++r+k+pk++++ kk +k+++k kkes++ + XP_010539045.1 97 HmhhhhhhmTQMGENAYGSRELEPNDALPTSP-TGGTMESAKPKRGKRPKEPKTTTSAIKKG--SKNQRKIKKESEELDldkimilktqhyqnnd 188 8889999999***************766.67777888899899999999887765554..666777777776644578********* PP GAGA_bind 187 ...........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLe 270 sk+++k ++++ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++r+aR++grKmS+++f+klL+ XP_010539045.1 189 eeeagkhiglgSKSDWKGQEMGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKRHARVGGRKMSGSVFNKLLS 283 ******************************************************************************************* PP GAGA_bind 271 kLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +LaaeG+dlsnpvDLkdhWAkHGtn+++ti+ XP_010539045.1 284 RLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 314 ****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.4E-136	1	314	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.6E-98	2	314	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MKQVMAIIAE RDAAIQERNL AISEKKAAVA ERDMAFLQRD TAIAERNNAV MERDNALVAL 60 QYRESSMVTT ATMSSCTAGC QISHGVKHMH HPQQHHHMHH HHHHMTQMGE NAYGSRELEP 120 NDALPTSPTG GTMESAKPKR GKRPKEPKTT TSAIKKGSKN QRKIKKESEE LDLDKIMILK 180 TQHYQNNDEE EAGKHIGLGS KSDWKGQEMG LNQVVYDETT MPPPVCSCTG VLRQCYKWGN 240 GGWQSSCCTT TLSMHPLPAL PNKRHARVGG RKMSGSVFNK LLSRLAAEGH DLSNPVDLKD 300 HWAKHGTNRY ITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539045.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539045.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
Swissprot	Q8L999	1e-169	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	R0GR44	1e-172	R0GR44_9BRAS; Uncharacterized protein
STRING	XP_010539043.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-162	basic pentacysteine 6