PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539026.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 216aa MW: 24904 Da PI: 6.5163

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.3	1.1e-30	16	69	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH++Fveave+LGG+++AtPk + elm+vkgL+++hvkSHLQ++R+ XP_010539026.1 16 PRLRWTDDLHRCFVEAVESLGGENRATPKMVWELMDVKGLSVSHVKSHLQMFRS 69 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.955	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-28	12	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-15	14	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	16	70	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MKPPTSVRPY VRSKVPRLRW TDDLHRCFVE AVESLGGENR ATPKMVWELM DVKGLSVSHV 60 KSHLQMFRSM KQERMLQEVE MANRNPRMAA NQAIWEFQQY HYFEQLRRFG YIMSDPQREE 120 ENIIQFGSSE ETGGGESSNL HDNQIENDHV ICQSLYERST VKRRRRGKAR GLESSKGEEE 180 ECGLTLSLNL EPPAAESSSH HEDLSLDLTL APTSKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539026.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539026.1	1e-162	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A0D3ASP3	1e-46	A0A0D3ASP3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DL83	1e-46	A0A3P6DL83_BRAOL; Uncharacterized protein
STRING	XP_010539026.1	1e-161	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	3e-31	G2-like family protein