PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538886.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 634aa    MW: 70539.8 Da    PI: 7.267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.83.4e-2948132187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+ +e+laL+++r++m++ +r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++ke +++r+++  + +++f qlea
  XP_010538886.1  48 RWPMEETLALLRIRSDMDSIFRDATLKAPLWEDVSRKLSELGYKRSAKKCKEKFENVQKYYKRTKEARGGRQDG--KAYKFFAQLEA 132
                     8********************************************************************98555..56******985 PP
2trihelix106.81.4e-33421506187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+ +e r+++++ k+plWee+s++m++ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf++l+a
  XP_010538886.1 421 RWPKVEVFALINLRSGLEPRYQEAAPKGPLWEEISSAMKRMGYNRSAKRCKEKWENINKYYKKVKESNKKR-PEDAKTCPYFHRLDA 506
                     8*********************************************************************8.99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717245107IPR001005SANT/Myb domain
CDDcd122034.67E-2547112No hitNo description
PROSITE profilePS500906.64448105IPR017877Myb-like domain
PfamPF138372.1E-2048133No hitNo description
PROSITE profilePS500906.934414478IPR017877Myb-like domain
SMARTSM007170.0056418480IPR001005SANT/Myb domain
PfamPF138379.3E-24420507No hitNo description
CDDcd122038.44E-29420485No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MDQGGGGGGE VVEEASPISS RPPANFEELM RFSAADYDGG GSSSSGIRWP MEETLALLRI  60
RSDMDSIFRD ATLKAPLWED VSRKLSELGY KRSAKKCKEK FENVQKYYKR TKEARGGRQD  120
GKAYKFFAQL EALNAATAAA NATAPSTLNV VPLSVANPIQ TPSSSPFSAF PPPPPPSVAN  180
PIQTPSSSPF SAFPPPPPPA VGGVTFSSHS SSTDSGMGSD DDDDDLDMDV DAAGPSSRKR  240
KRKRGHRHRG GSSSNSKLMD FFGGLVREVL QKQAAMQRSF IEALEKREQE RIDREEAWKR  300
QEMFRLAREQ ELLAQDRAAS ASRDSAILSL IQKITGHTIQ LPPPPPQLWP PPPTAAAAKP  360
APPPFRKMKH THHQHSRASE THNVQSQSPP IMAIPQQQIP PQMPEKHHDQ VGGSSDPASS  420
RWPKVEVFAL INLRSGLEPR YQEAAPKGPL WEEISSAMKR MGYNRSAKRC KEKWENINKY  480
YKKVKESNKK RPEDAKTCPY FHRLDALYSK KDQTSSPFST SRTPESVKVQ THLSASISDQ  540
KRKEEHMEES TQEGVFREGG AEKPEDLVKE MEQQEQEKQQ ELTIGEYEKV EEPLSFDLEA  600
DEDDEKMAYE IAFQNTANRG SSGHSEPSFL TVVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098KRSAKKCKE
2237242RKRKRK
3237243RKRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538886.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538884.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGXP_010538886.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-54GT-2-like 1