PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010538452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LSD | ||||||||
Protein Properties | Length: 145aa MW: 15834.8 Da PI: 4.7873 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.7 | 1.9e-13 | 58 | 82 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP G+++V+C++C+t+ XP_010538452.1 58 CGSCRRLLSYPQGSKYVKCSCCQTI 82 ***********************97 PP | |||||||
2 | zf-LSD1 | 45.4 | 1.3e-14 | 96 | 120 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Cr+lL+YP+GApsVRC++C V XP_010538452.1 96 CDNCRVLLMYPYGAPSVRCSSCSSV 120 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.9E-17 | 55 | 85 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.6E-11 | 58 | 82 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.0E-12 | 93 | 121 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.1E-12 | 96 | 120 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MREREEAPKE KEEATPQQAE DDEEGPPPGW ESAVIPPPSL PPSAAAAADV SEIAQMVCGS 60 CRRLLSYPQG SKYVKCSCCQ TINLVLEAHQ VGQVNCDNCR VLLMYPYGAP SVRCSSCSSV 120 TDIRENNKRP PWSEQQGQPK TSRAV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010538452.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538452.1 | 1e-102 | PREDICTED: protein LOL2 | ||||
Swissprot | O65426 | 1e-59 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | M4DWK8 | 2e-61 | M4DWK8_BRARP; Uncharacterized protein | ||||
STRING | XP_010538452.1 | 1e-102 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13611 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-49 | lsd one like 2 |