PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538354.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family BBR-BPC
Protein Properties Length: 235aa    MW: 25850.8 Da    PI: 10.8173
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind257.21e-7841235104301
       GAGA_bind 104 gtksidslqqlsepqledsavelreeeklealpieeaaeeakekk.kkkkrqrakkp.kekkakkkkkksekskkkvkkesaderskaekksidl 196
                      t+ id +q    +++++   ++    ++  +p+ +++++++++k +k k+ r+k+p k++k + ++k+++++kk +k++s+ +++k+ekk+ ++
  XP_010538354.1  41 RTTGIDLSQL---TRVNHVEGGMVPPAHIF-PPVGDTRNDTETTKpMKGKSTRQKSPsKTPKPNPPRKNPSAPKKPKKTPSV-PEVKREKKNPNI 130
                     5555555555...33333333333344444.445444444444440444444455442777888999999999999999997.69********** PP

       GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAk 291
                     +++  s+D s++P PvCsCtG++r+CYkWG GGWqS+CCt+++S yPLP+st+r+ aR+agrKmS+ga+ klL +La+eGydls+pvDLk+hWA+
  XP_010538354.1 131 NIDISSFDFSGVPSPVCSCTGVPRVCYKWGLGGWQSSCCTISVSKYPLPMSTTRPRARLAGRKMSNGAYVKLLLRLAGEGYDLSHPVDLKNHWAR 225
                     *********************************************************************************************** PP

       GAGA_bind 292 HGtnkfvtir 301
                     HGtnkfvti+
  XP_010538354.1 226 HGTNKFVTIK 235
                     *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.2E-781235IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-6878235IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSSYPHQNHM ISEANTGQGS AGMIATHVPW FYPGRFIPIP RTTGIDLSQL TRVNHVEGGM  60
VPPAHIFPPV GDTRNDTETT KPMKGKSTRQ KSPSKTPKPN PPRKNPSAPK KPKKTPSVPE  120
VKREKKNPNI NIDISSFDFS GVPSPVCSCT GVPRVCYKWG LGGWQSSCCT ISVSKYPLPM  180
STTRPRARLA GRKMSNGAYV KLLLRLAGEG YDLSHPVDLK NHWARHGTNK FVTIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538354.11e-174PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822861e-105BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA7UN681e-109A7UN68_ARAAE; GAGA-binding transcriptional activator (Fragment)
STRINGXP_010538354.11e-174(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-90basic pentacysteine 7