PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010538215.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 26749.6 Da PI: 5.083 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 73 | 130 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ +tY+ eHnh+ XP_010538215.1 73 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRDDPTMILVTYTCEHNHS 130 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-31 | 66 | 132 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-26 | 67 | 132 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-35 | 71 | 131 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-26 | 73 | 129 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.835 | 73 | 132 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MKRVLEMERS SLSESSQETR PESPNSSTFN DMKVVSSPSS PKRRRSVQKR VMTVPIRDVE 60 GYRLKGDTTP PLDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRDDPTMIL 120 VTYTCEHNHS CPTSITGPNK HRPKPEPEPE DDHRSEFMDL GEIETTPSWV DEFTWFGEME 180 TTSSTIFESS VFSSSERTNV SGSADVALFE DGEDESLFAG LGELPECSAI FQHEIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-19 | 49 | 133 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-19 | 49 | 133 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010538215.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538215.1 | 1e-175 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
Swissprot | Q9LP56 | 4e-99 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A178W6S1 | 1e-98 | A0A178W6S1_ARATH; WRKY65 | ||||
STRING | XP_010538215.1 | 1e-174 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5383 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 3e-69 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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