PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538175.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 314aa    MW: 35428.4 Da    PI: 4.6784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.2e-062052441054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r R +++ +++  L++l+ +      +K++ a++L +AveYIk L
  XP_010538175.1 205 RVRNEKLGDRITALQQLVSPF-----GKNDTASVLNEAVEYIKFL 244
                     5677889999********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.496195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-8205263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-6205249No hitNo description
SuperFamilySSF474591.14E-10205259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQTSNEKPLK HNTRAWWSSS EDMFSGCSLP RASEIGIDVG SFAWQNLDLL DVKYDRDLDS  60
VLGLPSHAAS PPDWYQSIIH SEGSVEAKFN QNSFFDGLFE PHDEQQLSSW PRIDPILDSR  120
VTDEKPELLD GVAFFDNVLF DDSGAVSVFH DVDIRAKSEE DHQDCKTITS KRTGENIEDF  180
EGYDDGFSRL KRPRIDTPSP LPSFRVRNEK LGDRITALQQ LVSPFGKNDT ASVLNEAVEY  240
IKFLHGQVAV LSNPYMKSGA SVHQVQQSSD KTASQREDLR RRGLCLMPIS STFLVASQMN  300
PSDFWNLPFC VNFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538175.10.0PREDICTED: transcription factor bHLH103 isoform X2
TrEMBLA0A087GQR87e-80A0A087GQR8_ARAAL; Uncharacterized protein
STRINGXP_010538167.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.13e-71bHLH family protein