PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT4G21340.1

Common Name

B70, BHLH103, EN62, T6K22.70

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 301aa MW: 34031.7 Da PI: 4.7163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G21340.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.1	4.9e-06	192	230	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L A++YIk Lq AT4G21340.1 192 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIDYIKFLQ 230 77788899******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.741	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-11	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.75E-7	190	233	No hit	No description
SMART	SM00353	0.001	191	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-9	194	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0003015	anatomy	primary root differentiation zone
PO:0005059	anatomy	root endodermis

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTEEFDTTGV CTGTWWSSSN GMFSGCSLPR SAEIVVDFGE IEWQNIDTLD AKTYNENYLS 60 TSTFLGNANL DTTSQIYVSS PSNIHEEERY NQINSFLEGL FDSSEQLLVP NCPKPELFES 120 FHFFDDVFPN ESRMISVFDH QKPKEDMQAC KSLTTCKRAS EKSGELEDIE SSQPLKRPRL 180 ETPSHFPSFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH DAIDYIKFLQ EQITEKVSTS 240 PHLNSIGSGE QKQWSDKSSN NTHNQNCSPR QDLRSRGLCL MPISSTFSTP PQHLDTSSLW 300 N

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	254404_at	0.0
Expression Atlas	AT4G21340	-
AtGenExpress	AT4G21340	-
ATTED-II	AT4G21340	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mature root endodermis. {ECO:0000269\|PubMed:16581911}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G21340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G21340

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065362	0.0	AY065362.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.
GenBank	AY122937	0.0	AY122937.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_193865.2	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q8VZ22	0.0	BH103_ARATH; Transcription factor bHLH103
TrEMBL	A0A178V325	0.0	A0A178V325_ARATH; B70
STRING	AT4G21340.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Link Out ? help Back to Top
Phytozome	AT4G21340.1
Entrez Gene	827884
iHOP	AT4G21340
wikigenes	AT4G21340

Publications ? help Back to Top
Heim MA, et al. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] Toledo-Ortiz G,Huq E,Quail PH The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Bailey PC, et al. Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell, 2003. 15(11): p. 2497-502 [PMID:14600211] Kamau E,Charlesworth D Balancing selection and low recombination affect diversity near the self-incompatibility loci of the plant Arabidopsis lyrata. Curr. Biol., 2005. 15(19): p. 1773-8 [PMID:16213826] Lee JY, et al. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(15): p. 6055-60 [PMID:16581911] Mace DL, et al. Quantification of transcription factor expression from Arabidopsis images. Bioinformatics, 2006. 22(14): p. e323-31 [PMID:16873489] Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Horiuchi J, et al. The floral volatile, methyl benzoate, from snapdragon (Antirrhinum majus) triggers phytotoxic effects in Arabidopsis thaliana. Planta, 2007. 226(1): p. 1-10 [PMID:17216481] Sherman-Broyles S, et al. S locus genes and the evolution of self-fertility in Arabidopsis thaliana. Plant Cell, 2007. 19(1): p. 94-106 [PMID:17237349] Liu P,Sherman-Broyles S,Nasrallah ME,Nasrallah JB A cryptic modifier causing transient self-incompatibility in Arabidopsis thaliana. Curr. Biol., 2007. 17(8): p. 734-40 [PMID:17412590] Tang C, et al. The evolution of selfing in Arabidopsis thaliana. Science, 2007. 317(5841): p. 1070-2 [PMID:17656687]