PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010537912.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 262aa MW: 29627.7 Da PI: 6.2258

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010537912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	69.8	4e-22	101	159	3	59
-SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg+ WrKYGqK +k+s+ + rsYY+C++ +C++kk+v++ +++p v ++tY g+H+++ XP_010537912.1 101 DGFVWRKYGQKCIKSSPlHQRSYYKCAYMeECNAKKHVQKIQDNPPVYQTTYLGRHTCQ 159 9*************9568***999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-22	89	159	IPR003657	WRKY domain
PROSITE profile	PS50811	17.959	94	156	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-20	97	160	IPR003657	WRKY domain
SMART	SM00774	3.6E-27	99	160	IPR003657	WRKY domain
Pfam	PF03106	4.2E-22	101	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDSAVEPLVR GQKSARELKK KIQNQGLSVE AEDLAESVIN SFSSAISHLT NSAHPLHHRS 60 SDFSSNSTAS SSHIPRRPSK RNRQADEVCS RQDSPFPNYP DGFVWRKYGQ KCIKSSPLHQ 120 RSYYKCAYME ECNAKKHVQK IQDNPPVYQT TYLGRHTCQH DQTPVFQILS DSAHDEVDGS 180 RMIHFGKLDQ ETNPVFTSTG PVNNHREVSK DDQMSQDDCI DQFFADDVEL WPLDSPASSA 240 GDIMIGSSQL DLSDYDPFRF MI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010537912.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010537912.1	0.0	PREDICTED: probable WRKY transcription factor 64
STRING	XP_010537912.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5609	18	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66560.1	6e-43	WRKY DNA-binding protein 64