PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G66560.1
Common NameATWRKY64, F28G11.2, T12I7.1, WRKY64
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 249aa    MW: 28549.9 Da    PI: 4.6772
Description WRKY DNA-binding protein 64
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G66560.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.8e-23103163259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrKYGqK++k s++ r YYrCt+a   +C+++k+v+  +++p v  +tY g+H ++
  AT1G66560.1 103 DDGFTWRKYGQKTIKTSPYQRCYYRCTYAkdqNCNARKRVQMIQDNPPVYRTTYLGKHVCK 163
                  8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.6997160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-2498164IPR003657WRKY domain
SuperFamilySSF1182901.29E-2399163IPR003657WRKY domain
SMARTSM007741.9E-34102164IPR003657WRKY domain
PfamPF031063.9E-23103163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MFSNIDQTAV AALLRGQGCA NSLKRLLENH KLSSDSTEPL IYTILNSFSL ALSFVDPPSL  60
LPHNESSLQN MTSHVLQRSS KKKYYGAEDL EYYRDESPTP RPDDGFTWRK YGQKTIKTSP  120
YQRCYYRCTY AKDQNCNARK RVQMIQDNPP VYRTTYLGKH VCKAVAVHDD TYGSEMIKFD  180
QVVSESVMPQ LATIDEQAIT MEDEAIDHIM NQECDINDFS VDDDPFWASQ FPPFSSEDIM  240
FFDNIANLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-16103163969OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184085430.0
Genevisible256364_at8e-89
Expression AtlasAT1G66560-
AtGenExpressAT1G66560-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group III
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G66560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G66560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0718500.0AY071850.1 Arabidopsis thaliana WRKY transcription factor 64 (WRKY64) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176829.10.0WRKY DNA-binding protein 64
SwissprotQ9C5570.0WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLA0A178W2X01e-163A0A178W2X0_ARATH; WRKY64
STRINGAT1G66560.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]