PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537280.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 521aa    MW: 59794 Da    PI: 9.3759
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.12.4e-2842126187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++ e+laL+++r+em++++r+++lk plWe++s++m+e g++rs+k+Ckek+en+ k++k++keg+ ++   + ++++++++lea
  XP_010537280.1  42 RWPRPETLALLRIRSEMDSAFRDSALKSPLWEQISRNMAELGYRRSAKKCKEKFENVYKYHKRTKEGRFSKP--EGKSYRFYNELEA 126
                     8********************************************************************974..4446******985 PP
2trihelix96.81.9e-30362448187
        trihelix   1 rWtkqevlaLiearre.meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r++ ++ +++++ +k+ lWee+s  mr+ g++r++k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  XP_010537280.1 362 RWPKAEVEALIRLRTNaDDYKFQENGAKGSLWEEISVGMRRLGYNRNAKRCKEKWENINKYFKKVKENNKKR-PIDSKTCPYFHQLEA 448
                     8*************9615679**************************************************8.9999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.009639101IPR001005SANT/Myb domain
CDDcd122032.40E-2441106No hitNo description
PfamPF138375.4E-1941126No hitNo description
PROSITE profilePS500906.9464199IPR017877Myb-like domain
SMARTSM007170.59359422IPR001005SANT/Myb domain
PfamPF138377.2E-22361449No hitNo description
CDDcd122036.34E-24361427No hitNo description
PROSITE profilePS500907.039361420IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MLGDSGEVLE SFPVAATAGE EEKLEDSGEI ATVSGGGGGG NRWPRPETLA LLRIRSEMDS  60
AFRDSALKSP LWEQISRNMA ELGYRRSAKK CKEKFENVYK YHKRTKEGRF SKPEGKSYRF  120
YNELEAFESL HSYPLEPKSR IHKLPPTTTV TTTASLVPWI NPSNGTNPTL FTKKQSTIAS  180
YNSHTVLSSG YKTNPNDFPS NVPWMNLFSS STSSSTASDE EEIEGKRSRK RRKYFKGLLK  240
RLTNDLMEKQ DKMQKKFLET LEKLEKERVA REEAWRIQET ARIHREYEIL VHGRSEAAVK  300
DSAIISFLQN VSGQQIQQFR GDQKIRIQND QKQDEIRTVE ATSKKMNNGD NSNYFLSPSS  360
SRWPKAEVEA LIRLRTNADD YKFQENGAKG SLWEEISVGM RRLGYNRNAK RCKEKWENIN  420
KYFKKVKENN KKRPIDSKTC PYFHQLEAIY KEKNKASALS LMAAPQQQLL PPQESYEMEN  480
LGNGNRDEER DSEEEENETG GFEMAMNKTV SPMDIDNNVF A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537280.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-178TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A178W7Z21e-176A0A178W7Z2_ARATH; GT2
STRINGXP_010537280.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-142Trihelix family protein