PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537278.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 424aa    MW: 48781.5 Da    PI: 6.7491
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.47.1e-27115209185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+++v++Li+a+++++e++  ++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d +
  XP_010537278.1 115 KWTDKMVKLLITAVSYIGEDSAMDCgtrrkfavlQKKGKWKSVSKAMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 209
                     7*******************99987788889999**********************************************569999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-25113236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEGNFSQGGM IPGGPPYGGF DLQSSMRVHH PNTMHHHQNP RPDSSVRPSL HEGLPFTMFT  60
GKTCDQNVSM AEYNKGERGK CSMSDEDEPS LTEEGGDGHN EGSKAKKGSP WQRVKWTDKM  120
VKLLITAVSY IGEDSAMDCG TRRKFAVLQK KGKWKSVSKA MAERGYHVSP QQCEDKFNDL  180
NKRYKKLNDM LGRGTSCQVV ENPALLDVID YLNEKEKDDI RKILSSKQLF YEEMCSYHNG  240
NRLHLPHDHA LQRSLQLALR SRDDHDNDDA RKHTNEDLDD EDHDMETDNH VDCEEHHHSF  300
HGDGRGMHHP ALGVPLKRLR QGHNLGDHPA ISPAHVNQQP LPDSGRSAWL QKKWIESRSL  360
QLEEQKLQIQ AELLELEKQR FKWERFSKKR DQELEKLRTE NERMKLENDR MELELKRGEM  420
GGDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537278.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537278.10.0PREDICTED: uncharacterized protein LOC104812040
TrEMBLA0A067GYJ60.0A0A067GYJ6_CITSI; Uncharacterized protein
TrEMBLV4V6N50.0V4V6N5_9ROSI; Uncharacterized protein
STRINGXP_010537278.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors