PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537203.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 740aa    MW: 81181.6 Da    PI: 6.2787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2055110156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe++F+++++p++++r eL+++l L+++q+k+WFqNrR+++k
  XP_010537203.1  55 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALETKQIKFWFQNRRTQMK 110
                     79999************************************************999 PP
2START187.57e-592514742206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     la++a++el+k+a+ ++p+W k      es+n de+++  + + +      +  ea+r++gvv  ++  lve+l+d + +W+e+++    +a+t+
  XP_010537203.1 251 LALKAMDELIKLADPDCPLWIKNTnsekESLNHDEYRSVYAGA-TctrnpgFAAEASRETGVVLINSLALVETLMDAN-RWTEMFEsivaRASTI 343
                     6899******************999999999999999888544.25888999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vissg      g lqlm+ae+q++splvp R + f+Ry++q+ +g w++vdvS d +++ p+ +s+  +++lpSg++i++++ng+skvtwveh 
  XP_010537203.1 344 DVISSGtggsmnGCLQLMQAEFQVISPLVPtRQVKFLRYCKQHADGLWAVVDVSSDINRDGPNLQSYGGCRRLPSGCIIQDMGNGYSKVTWVEHS 438
                     **************************************************************9******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h l+r+l++sgl  ga++ +atlqrqce+
  XP_010537203.1 439 EYDESNVHHLYRQLLSSGLGLGAQRSLATLQRQCES 474
                     **********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.97E-2038112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-2141106IPR009057Homeodomain-like
PROSITE profilePS5007117.73452112IPR001356Homeobox domain
SMARTSM003899.5E-1854116IPR001356Homeobox domain
CDDcd000866.83E-1955112No hitNo description
PfamPF000464.7E-1855110IPR001356Homeobox domain
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PROSITE profilePS5084841.609241477IPR002913START domain
SuperFamilySSF559611.65E-31244475No hitNo description
CDDcd088753.23E-116245473No hitNo description
SMARTSM002347.3E-48250474IPR002913START domain
PfamPF018521.4E-51251474IPR002913START domain
SuperFamilySSF559611.15E-18520735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MNGHGDIGLG GESFDPGFLG RLRDDEYESR SGSDNFDAVS GDDQEARGQD KGRKKKKYHR  60
HTPHQIQELE SFFKECPHPD EKQRLELSRR LALETKQIKF WFQNRRTQMK TQLERHENVI  120
LRQENEKLLA ENDLLKEAMR SPVCNACGGP AVPGDVTYEQ QHLRFENARL KDELARISSL  180
ANKFLGRPVS SLVGPPPQPS GLDVSILGLA TGINGGISSD IPLGIDFGDG HLMKPPGGND  240
IVYERSMFVD LALKAMDELI KLADPDCPLW IKNTNSEKES LNHDEYRSVY AGATCTRNPG  300
FAAEASRETG VVLINSLALV ETLMDANRWT EMFESIVARA STIDVISSGT GGSMNGCLQL  360
MQAEFQVISP LVPTRQVKFL RYCKQHADGL WAVVDVSSDI NRDGPNLQSY GGCRRLPSGC  420
IIQDMGNGYS KVTWVEHSEY DESNVHHLYR QLLSSGLGLG AQRSLATLQR QCESFSALLS  480
SLNPTDNHSG LTPAGAKSVL KLAQRMGFNF FAGVSGSSVR KWEKLPVANV GEDMRILTRK  540
NVSDPGEPSG VILSAATSVW IPVAQHRLFD FLRDQNCRNQ WDILSNGGTM NEMVRIPKGR  600
QHDGNSVSLL RASQGIDQTE SSMLILQETW TDPSGAMVVY APVDVSSMNV VMNGGDSAYV  660
ALLPSGFWIS PDGSKGKVKN EVDGNTTTST SNNNGGCILT VGFQILVNSL PNARLNMESV  720
DTVNNLISCT IHKIKGALLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00559DAPTransfer from AT5G52170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537197.10.0PREDICTED: homeobox-leucine zipper protein HDG7-like isoform X1
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A1Q3CYE90.0A0A1Q3CYE9_CEPFO; Homeobox domain-containing protein/START domain-containing protein
STRINGXP_010537197.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]