PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537133.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 371aa    MW: 40197.9 Da    PI: 5.7021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.8e-31186244259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+geH+h+
  XP_010537133.1 186 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLDPNILVVTYTGEHTHP 244
                     79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-31172246IPR003657WRKY domain
SuperFamilySSF1182901.2E-26178246IPR003657WRKY domain
PROSITE profilePS5081132.776180246IPR003657WRKY domain
SMARTSM007745.5E-38185245IPR003657WRKY domain
PfamPF031063.9E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSEDWDLFAV VRSCGSLASS IAGDGGDEDK DDDDSRKPEN PLSSLAAGFS FDRQEPSSFP  60
DGDDRDRNTA MESSSNCNKL RDSRKPFLSS CCSSSSSSSS SSSPSLVSTV NNVLKREQGN  120
KPQARKALGG VRVFPSSETT IPPPPVFVFR GQREEQQQPQ APARSRKRKN QQKRTICHVT  180
QENLSSDMWA WRKYGQKPIK GSPYPRNYYR CSSSKGCSAR KQVERSNLDP NILVVTYTGE  240
HTHPRPTHRN SLAGSTRIKP QTVNPELPGQ AKPGPNDAAK PSEILSPTTP LKENDVIQGT  300
HVDEDDADAD VDVDDDDGGG DGHDDHVDGL LLLIPNLTVR DRENLFSNVQ GFVGAFPSWS  360
PGGSAAGEGG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-211872471880Disease resistance protein RRS1
5w3x_D7e-211872471880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170ARSRKRKNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537133.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 27
SwissprotQ9FLX81e-91WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A1J3E2741e-106A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRINGXP_010537133.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-80WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]