PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536589.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 314aa MW: 34810 Da PI: 6.3185

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	175	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010536589.1 175 SHSLAERVRREKISERMRILQKLVPGC----DKVTGKALMLDEIINYVQSLQ 222 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-17	169	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.59E-10	169	226	No hit	No description
PROSITE profile	PS50888	15.612	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	171	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAAFSSFQQY HPFLLDPLLL PSSNITPPAI NAPPFKLSSI FANLDNNDAL PDSTTPNFES 60 NPFCNNINTA DDSLDQVALV ATVDEVLSQE NESSGPKRHS TTTTTTTESS AAAATVGHRR 120 RKPGNRSINS KEEKEGGKSK RQKKGGEEEK DKKASEEPPK DYIHVRARRG QATDSHSLAE 180 RVRREKISER MRILQKLVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM KLASMSPVVY 240 DFGVDLDTFM VRPEMGLTEA FTEAMPTTTT PLFPNSLLHP HLPLSHGNNI NDDEQRQKFI 300 NPSGFTNNSF CSFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	142	RRKPGNRSINSKEEKEGGKSKRQK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536589.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536589.1	0.0	PREDICTED: transcription factor bHLH137 isoform X1
Refseq	XP_010536590.1	0.0	PREDICTED: transcription factor bHLH137 isoform X2
Refseq	XP_010536591.1	0.0	PREDICTED: transcription factor bHLH137 isoform X1
Swissprot	Q93W88	9e-89	BH137_ARATH; Transcription factor bHLH137
TrEMBL	D7MQU8	1e-89	D7MQU8_ARALL; Basic helix-loop-helix family protein
STRING	XP_010536590.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]