PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536499.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 299aa    MW: 31938.8 Da    PI: 9.5764
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.7e-36651763112
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 
                     ++k++ +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++  +        ++ +++       
  XP_010536499.1  65 AAKKPAKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTIPAIAVsvN--------GTLKIPtvypekl 151
                     6899**************************************************************99444221........1111222223333 PP

             TCP  89 .kaaksaakskksqksaasalnlak 112
                      +a +++++  +++++ ++++++ +
  XP_010536499.1 152 eNAGADDEEAARKRRKRNCNSEFID 176
                     2333333344444444444455544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.02570124IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2970146IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MESNQEGKAI REIDENVVLT DAVNVNNKGS PVNRTHPESD PVLPMKQETT MDRSLSVAIL  60
SRRSAAKKPA KDRHTKVEGR GRRIRMPAAC AARIFQLTRE LGHKSDGETI RWLLERAEPA  120
IIEATGTGTI PAIAVSVNGT LKIPTVYPEK LENAGADDEE AARKRRKRNC NSEFIDVSEQ  180
SVGSSVTSGL APITASTYGV NVNVNVNTQN LVPFWPMGPA TAALVANGPN HSAHLWPIPP  240
FLNVAARSIS AXAPEGSAVG SSNGTVTRGG GFSLEILEKK ELQFLGGSGN NRPSSCPKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536499.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT893e-97TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A1J3FA251e-107A0A1J3FA25_NOCCA; Transcription factor TCP19 (Fragment)
STRINGXP_010536499.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-93TCP family protein