PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536380.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 367aa MW: 39969.5 Da PI: 7.0548

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	232.4	7.7e-72	123	288	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..............kskk 82 r+g+++CqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerq+qlaa+++++ s + +++kr +e + XP_010536380.1 123 RQGGMNCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQAQLAALQHQQGGSCRGDNAKRLHEPsgeggdtddgkeldHGVG 217 7899*******************************************************9999966666655555555666666665556778 PP DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +sal+ t++++a+s+ le+ ++P+evss+avfrcvrvss+dd++ee+aYqtav+igGh+fkGiLydqG+++ XP_010536380.1 218 ASALAVTRVVNANSS-GLEIGHFPPEVSSPAVFRCVRVSSIDDEDEEYAYQTAVNIGGHIFKGILYDQGPDH 288 899999999999866.999999**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-65	126	287	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-28	238	286	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAGFFYLGGG RDHHNNKQDH NYHHHHHHQD KDQEDKSNYL YLYKDEIYNN NKGFELWPPQ 60 YFQEQQQHVS PANFYSLGMV PNGSGSSSNN NNNNNNINRC RSLYFNVVSD EPLGSSGGFT 120 VTRQGGMNCQ DCGNQAKKDC AHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQAQLAAL 180 QHQQGGSCRG DNAKRLHEPS GEGGDTDDGK ELDHGVGASA LAVTRVVNAN SSGLEIGHFP 240 PEVSSPAVFR CVRVSSIDDE DEEYAYQTAV NIGGHIFKGI LYDQGPDHSH NGYNSSPKAT 300 AAANANAASG SSQHLNLLAS TANAVTTAVT AGNNNNNASS WLDSASLYPA PLNAFIAGTP 360 FFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAGFFYLGGG RDHHNNKQDH NYHHHHHHQD KDQEDKSNYL YLYKDEIYNN NKGFELWPPQ  60
YFQEQQQHVS PANFYSLGMV PNGSGSSSNN NNNNNNINRC RSLYFNVVSD EPLGSSGGFT  120
VTRQGGMNCQ DCGNQAKKDC AHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQAQLAAL  180
QHQQGGSCRG DNAKRLHEPS GEGGDTDDGK ELDHGVGASA LAVTRVVNAN SSGLEIGHFP  240
PEVSSPAVFR CVRVSSIDDE DEEYAYQTAV NIGGHIFKGI LYDQGPDHSH NGYNSSPKAT  300
AAANANAASG SSQHLNLLAS TANAVTTAVT AGNNNNNASS WLDSASLYPA PLNAFIAGTP  360
FFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536380.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	1e-146	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	1e-144	A0A178W9B5_ARATH; SRS5
STRING	XP_010536380.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-110	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]