PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010536379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | DBB | ||||||||
Protein Properties | Length: 340aa MW: 36925.4 Da PI: 7.2962 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.2e-07 | 3 | 34 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 kC+ +e++e++ fC+ ++ +C C H+ XP_010536379.1 3 IKCDVCEKEEASVFCTADEASICSICDHRVHH 34 58*************************99974 PP | |||||||
2 | zf-B_box | 28.9 | 2.4e-09 | 52 | 90 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++ek++ lfC++++ lC+dC + +H Ht XP_010536379.1 52 SPPLCDICQEKRAFLFCQQDRAILCKDCDTPIHAAneHT 90 5789*****************************556776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.765 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-5 | 3 | 34 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.13E-6 | 3 | 34 | No hit | No description |
SMART | SM00336 | 2.7E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-14 | 51 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.954 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-7 | 53 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.54E-9 | 54 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MKIKCDVCEK EEASVFCTAD EASICSICDH RVHHANKLAS KHLRFSLLQS SSPPLCDICQ 60 EKRAFLFCQQ DRAILCKDCD TPIHAANEHT KKHDRFLLTG IKLSSESCPY KPTSGSSPSS 120 ATTHDCSVPG SSISNPPIKK PVSAQQIKSS IHSSLNKPQP QLEKPAVPAQ EAAVAVAPAS 180 KNGGDDAAAN QSGCTSTISE YLIEMLPGWH VEDLLDSSVP PFGFYKNDDG MLPYMEGEIN 240 NNSRSFGSVP SENLGIWVPQ IPQTMASSHQ NQYHSHGSNG NTQIGMFKEA VCSYVPTPNM 300 KQQQQGGGGG QNKRCFDDGG FTVPQIPSPR HNNKKSRSLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010536379.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536379.1 | 0.0 | PREDICTED: B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 1e-133 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1J3D2N3 | 1e-134 | A0A1J3D2N3_NOCCA; B-box zinc finger protein 21 | ||||
STRING | XP_010536379.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5400 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-127 | salt tolerance homolog2 |