PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536234.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 256aa    MW: 27296.4 Da    PI: 6.6919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536234.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1852102155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa+ +++g
  XP_010536234.1  52 PVFRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAAMSIKG 102
                     579****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-1352102IPR001471AP2/ERF domain
SMARTSM003802.8E-3353116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3153110IPR001471AP2/ERF domain
PROSITE profilePS5103222.68253110IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2153110IPR016177DNA-binding domain
PRINTSPR003679.9E-105465IPR001471AP2/ERF domain
CDDcd000185.17E-2054110No hitNo description
PRINTSPR003679.9E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MIVPPSSDNG DRTLEGSARQ LALVSAPGSA NHGGKKNGGE KAKRIRDSSK HPVFRGVRMR  60
TWGKWVSEIR EPRKKSRIWL GTFPTPEMAA RAHDAAAMSI KGASAVLNFP GLAGTFPRPV  120
SLNPRDVQAA ALKAAHMETT TSFSTSPTSL SSGTASFSSS QSSSSLESLV SAMELSSSSS  180
RTESEELGEI VELPILGPSY DGSAQLGGEF VFSDSVDFWV YPPPWMQNSE LEDYGHVNGG  240
TFLNPSFDGG LSSWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18491101072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536234.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536234.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD32e-82DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J3G4S82e-85A0A1J3G4S8_NOCCA; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J3H0D82e-85A0A1J3H0D8_NOCCA; Dehydration-responsive element-binding protein 3
STRINGXP_010536234.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]