PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536085.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 265aa    MW: 28935.8 Da    PI: 6.6076
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.53.4e-31160216158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e e+k+ +k rkpylheSRhkhA+rR R+sgGrF
  XP_010536085.1 160 QEPVYVNAKQYEGILRRRKARAKAELERKV-TKDRKPYLHESRHKHAMRRLRASGGRF 216
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.8E-34158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.798159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.2E-28161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.8E-23162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.8E-23193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQSKPGSGNE AEARSHVVTQ PMMYHERWWR NNAFGMEPQA GPSGIPSNSS SLECPNGSES  60
NEVQSASEDG ALNGENDGTL ENRGQDGNDS AHMSSLPVMH DQQLAQPPEL VGHYIACISN  120
PYQDAYYGGM MGAYGHQPVG FPPYIGMPRE RTALPLDMTQ EPVYVNAKQY EGILRRRKAR  180
AKAELERKVT KDRKPYLHES RHKHAMRRLR ASGGRFAKKS ELEGAESGTK ERETGSAQSQ  240
SATNSSGSEP VRTDSVDTPD SSGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-18159216158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200209RHKHAMRRLR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536085.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_010536086.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV51e-137NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLV4LN101e-138V4LN10_EUTSA; Uncharacterized protein
STRINGXP_010536085.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59462646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-115nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]