PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536037.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 363aa    MW: 41606.4 Da    PI: 5.0074
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.91.7e-2050149186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                     +Wt++ +++Li ++ +++++   +               kk++W+ vsk m  +g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++
  XP_010536037.1  50 KWTDDVIRLLISVVASIDDDGLIDGgaeeglkskhgclHKKGKWKMVSKIMIGKGCRVSPQQCEDKFNDLNKRYKKLNDILGRNiSCSVVENPSL 144
                     7**************8888887643345566777788899******************************************99899***99999 PP

        trihelix  82 fdqle 86 
                      d++ 
  XP_010536037.1 145 MDSMS 149
                     99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-1848175No hitNo description
Gene3DG3DSA:1.10.601.101.4E-4204342No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNWDKGKGID PQNSSGSDSE KDEPFLTEDG YAEQCTEVND EMGIPWQRMK WTDDVIRLLI  60
SVVASIDDDG LIDGGAEEGL KSKHGCLHKK GKWKMVSKIM IGKGCRVSPQ QCEDKFNDLN  120
KRYKKLNDIL GRNISCSVVE NPSLMDSMSH LSAKAKDEVR KILNSKHLFY KEMCAYHNGQ  180
NLPDCHYLDH QGSALMPVDG CSREINKVDD DGDDDDDEKY SSDESDDDDD SDSEDEDGDN  240
GIQASEQHVG LDSFRAQMSR IFKDPTKSSR ERKDWIKKKK LVIHKQRAII QTRAFQIDKQ  300
CFKWLRYCSK KNEELEGLRM ENEVMRIENE QSLLRLKQKE LELGLGRSET YFDCSYHGTG  360
NHQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536037.10.0PREDICTED: uncharacterized protein LOC104811130
TrEMBLA0A2I4FH561e-128A0A2I4FH56_JUGRE; uncharacterized protein LOC108998738
STRINGXP_010536037.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167391012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.13e-60