PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535624.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 309aa    MW: 34803 Da    PI: 9.5879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.74e-201361250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++ + nr++ f +R+ +++KKA+EL +LCd+evavi ++++g++++++
  XP_010535624.1 13 SSKAQANRKTAFERRQLTVMKKAQELATLCDVEVAVICYGPDGEIQTWP 61
                    688999******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4163IPR002100Transcription factor, MADS-box
PfamPF003194.8E-151760IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.7971764IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-171794IPR002100Transcription factor, MADS-box
CDDcd002667.17E-171986No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSSCSSISS SSSSKAQANR KTAFERRQLT VMKKAQELAT LCDVEVAVIC YGPDGEIQTW  60
PREMSKGKEV AEKYKKLSST DKGKKNLTLH QFLGKIKKEE DDKKKKMKTG HDLDRYTAEE  120
LAALSDSLDH KSQNLQKRRR FLHSQKRMTA DLSETKNDQF SVNQETKKPE SDLSLVPFEQ  180
QVTESVNLQE TLTYGSFNSV GHGSGPPNYG NFGPAISQAP TPLVCYPNTQ TSRNGSMMNM  240
GDYSRFLAPQ AYQNHTFQHP SGFNPNNIGF QTQLPQIQTP TRTLQQFDPL SAWNPTPSAV  300
SRMFFREFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535624.10.0PREDICTED: agamous-like MADS-box protein AGL103
STRINGXP_010535624.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.18e-22AGAMOUS-like 103