PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010535528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29165.6 Da PI: 8.3442 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ XP_010535528.1 64 RGKMTPQEERLVLELHVKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 109 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.018 | 20 | 58 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-9 | 44 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-22 | 44 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.053 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 64 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-12 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 71 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGFYCQSFRF EGGGRSIIGR LVLDMGGLWK GPSINDPSFV VGLNRTGKSC RLRWGNYLHP 60 GLKRGKMTPQ EERLVLELHV KWGNRWSKIA RKLPGRTDNE IKNYWRTHMR KKAQEKKRSM 120 SRTSSSSNCC SSTATTATTQ DSLQSPDSGS GKASFYDTGG FDGKLNQEVE DCEGGYSMDD 180 IWKEIDQSEA SILKPVIDIY AEQSCYLNYP PLASPAWESS LDSIWNMEAD ESKMSFAIDQ 240 FPHYSGYVRS SSSSPSSSLA G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-18 | 45 | 113 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-18 | 45 | 113 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-18 | 45 | 113 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-18 | 45 | 113 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-18 | 45 | 113 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-18 | 45 | 113 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010535528.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229048 | 7e-99 | AK229048.1 Arabidopsis thaliana mRNA for MYB27 protein - like, complete cds, clone: RAFL16-34-F17. | |||
GenBank | DQ075252 | 7e-99 | DQ075252.1 Arabidopsis thaliana MYB transcription factor MYB59-1 (At5g59780) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535527.1 | 0.0 | PREDICTED: transcription factor MYB59 isoform X4 | ||||
Refseq | XP_010535528.1 | 0.0 | PREDICTED: transcription factor MYB59 isoform X2 | ||||
Swissprot | Q4JL84 | 2e-96 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A0D3B2J6 | 1e-103 | A0A0D3B2J6_BRAOL; Uncharacterized protein | ||||
STRING | XP_010535526.1 | 1e-133 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 4e-98 | myb domain protein 59 |
Publications ? help Back to Top | |||
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