PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535485.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 602aa    MW: 67094.7 Da    PI: 8.8727
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07508557147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ I  +      +Rt  ++k++w ++
   XP_010535485.1 508 RRPFSVAEVEALVQAVEKLGTGRWRDIKLRAFenaDHRTYVDLKDKWKTL 557
                      6789999********************988888999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.72E-6319393IPR029071Ubiquitin-related domain
PROSITE profilePS500539.439323393IPR000626Ubiquitin domain
CDDcd017690.00483326395No hitNo description
PROSITE profilePS5129416.706503562IPR017930Myb domain
SMARTSM007176.5E-8507560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10508558IPR009057Homeodomain-like
CDDcd116607.45E-18509559No hitNo description
SuperFamilySSF466897.35E-16509590IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MVSHKRLEFG DNGYRLPANA RARRSARKKR IFEKNCGDDR MRAFDLLATV AGTLLLESGN  60
FQSASETPII GSKEKCLALQ NTVKNEFPDE EKPVKVESFC GDKHFTGAPS SCDDVHCGPS  120
SAITNPDDSL MIENLENAVE GLGNSDRSDS CEVGSFDQGF KPDVNGDPVV LEVKPDVVVS  180
LGGSSSIPEL PVCGKDVFHG SRDDVNLVSR DDDENFSGYS HRSTTKRSCR HVPRIGDRRI  240
RKILASRYWK GGTKNADVKP WYSAKRNYYL HHQRNYPIKK RRYFDYISEL NSDDYNLARK  300
MGSRTISSLK CQNGSYVSRD SHVRMRIKSF RVPELFIEIP ETATVGSLKR TVMEAVTSVL  360
GGGGIRVGLM LQGKKVRDDS KTLLQTGISQ DNTHLDSLGF CLEPSSEASP LPCHTPLPLT  420
RYPPVDTISH LHGCDDHVGN MLDSVLDSVA CSSDSYGEKS GKDDSRALVP MEEAPAMAPR  480
SVTALAPRPP SRKSKRAEQQ QAAHRRIRRP FSVAEVEALV QAVEKLGTGR WRDIKLRAFE  540
NADHRTYVDL KDKWKTLVHT ARITPQQRRG EPMPQELLDR VLNAHSYWAQ QQQQLKAATA  600
AM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-514895921101Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535485.10.0PREDICTED: telomere repeat-binding protein 2 isoform X2
SwissprotQ9SNB90.0TRP2_ARATH; Telomere repeat-binding protein 2
TrEMBLR0HIP80.0R0HIP8_9BRAS; Uncharacterized protein
STRINGXP_010535482.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-114TRF-like 2
Publications ? help Back to Top
  1. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]