PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010535484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 604aa MW: 67307.9 Da PI: 8.9746 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.4e-07 | 510 | 559 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ I + +Rt ++k++w ++ XP_010535484.1 510 RRPFSVAEVEALVQAVEKLGTGRWRDIKLRAFenaDHRTYVDLKDKWKTL 559 6789999********************988888999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 6.4E-6 | 321 | 395 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.439 | 325 | 395 | IPR000626 | Ubiquitin domain |
CDD | cd01769 | 0.00468 | 328 | 397 | No hit | No description |
PROSITE profile | PS51294 | 16.706 | 505 | 564 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-8 | 509 | 562 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 510 | 560 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 8.04E-18 | 511 | 561 | No hit | No description |
SuperFamily | SSF46689 | 7.35E-16 | 511 | 592 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008301 | Molecular Function | DNA binding, bending | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MVSHKRLEFG DNGYRLPANA RARRSARKKR IFEKNCGDDR MRAFDLLATV AGTLLLESGN 60 FQSASETPII GSKEKCLALQ NTVKNEFPDE EKPVKVESFC GDKHFTGAPS SCDDVHCGPS 120 SAITNPDDSL MIENLENAVE GLGNSDRSDS CEVGSFDQGF KPDVNGDPVV LEVKPDVVVS 180 LGGSSSIPEL PVCGKDVFHG SRDDVNLVSR DDDENFSGYS HRSTTKRSCR HVPRIGDRRI 240 RKILASRYWK GGTKNADVKP WYSAKRNYYL HHQRNYPIKK RRYFDYISEL NSDDYNLARK 300 MGRGSRTISS LKCQNGSYVS RDSHVRMRIK SFRVPELFIE IPETATVGSL KRTVMEAVTS 360 VLGGGGIRVG LMLQGKKVRD DSKTLLQTGI SQDNTHLDSL GFCLEPSSEA SPLPCHTPLP 420 LTRYPPVDTI SHLHGCDDHV GNMLDSVLDS VACSSDSYGE KSGKDDSRAL VPMEEAPAMA 480 PRSVTALAPR PPSRKSKRAE QQQAAHRRIR RPFSVAEVEA LVQAVEKLGT GRWRDIKLRA 540 FENADHRTYV DLKDKWKTLV HTARITPQQR RGEPMPQELL DRVLNAHSYW AQQQQQLKAA 600 TAAM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-51 | 491 | 594 | 1 | 101 | Telomere binding protein TBP1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010535484.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535482.1 | 0.0 | PREDICTED: telomere repeat-binding protein 2 isoform X1 | ||||
Refseq | XP_010535483.1 | 0.0 | PREDICTED: telomere repeat-binding protein 2 isoform X1 | ||||
Refseq | XP_010535484.1 | 0.0 | PREDICTED: telomere repeat-binding protein 2 isoform X1 | ||||
Swissprot | Q9SNB9 | 0.0 | TRP2_ARATH; Telomere repeat-binding protein 2 | ||||
TrEMBL | R0HIP8 | 0.0 | R0HIP8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010535482.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-115 | TRF-like 2 |
Publications ? help Back to Top | |||
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