PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010535415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19485.2 Da PI: 5.6956 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.6e-07 | 30 | 73 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ E + + da + + + +W ++a++++ g+t +++ + XP_010535415.1 30 TWTAAENKAFEDALAVYDDDtpdRWQKVAAMIP-GKTVGDVIKQY 73 5*****************99*************.***99998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.5E-7 | 27 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-6 | 30 | 76 | No hit | No description |
Pfam | PF00249 | 2.0E-5 | 30 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-11 | 30 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MEILRPTAHV SGGNWILPEE TVKNSSTAAT WTAAENKAFE DALAVYDDDT PDRWQKVAAM 60 IPGKTVGDVI KQYTELEADV INIEAGLVPV PGYITSPFTL DWAGGYNGLK PVGSKRSPAA 120 RPPEHERKKG VPWTEEEHKH LQRLWLEESY EDVVVIRLYK IWFCIYMKKG KGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 31 | 96 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | Transfer from AT5G58900 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010535415.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535415.1 | 1e-126 | PREDICTED: transcription factor DIVARICATA isoform X2 | ||||
Swissprot | Q8S9H7 | 1e-49 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M4CRA0 | 2e-67 | M4CRA0_BRARP; Uncharacterized protein | ||||
STRING | XP_010535414.1 | 3e-96 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-66 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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