PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010535414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28296.7 Da PI: 7.1465 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1.1e-14 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky XP_010535414.1 132 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 176 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.172 | 26 | 80 | IPR017884 | SANT domain |
SMART | SM00717 | 6.5E-7 | 27 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-6 | 30 | 76 | No hit | No description |
SuperFamily | SSF46689 | 1.87E-10 | 30 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.59 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.83E-17 | 127 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 128 | 180 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-13 | 129 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-13 | 129 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-13 | 132 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.51E-12 | 132 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEILRPTAHV SGGNWILPEE TVKNSSTAAT WTAAENKAFE DALAVYDDDT PDRWQKVAAM 60 IPGKTVGDVI KQYTELEADV INIEAGLVPV PGYITSPFTL DWAGGYNGLK PVGSKRSPAA 120 RPPEHERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ 180 LSGGKDKRRA SIHDITTFNL DDHAPLTPSG PIPWSQTFDP NPGFHSHAHH LLGTSNGDHQ 240 NAPFQLYSAY STQVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-17 | 31 | 96 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | Transfer from AT5G58900 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010535414.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535414.1 | 0.0 | PREDICTED: transcription factor DIVARICATA isoform X1 | ||||
Swissprot | Q8S9H7 | 4e-99 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | V4KWX6 | 1e-120 | V4KWX6_EUTSA; Uncharacterized protein | ||||
STRING | XP_010535414.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-119 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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