PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535231.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 264aa    MW: 30247.6 Da    PI: 9.5316
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.93.9e-11251001286
        trihelix  12 earremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +a  e++   ++g+lk  +W+ev + ++  gf    ++ +qCk++++ ++kryk++k+++  +  +  s++++f++l+
  XP_010535231.1  25 QAEAEVGGGWNTGNLKYEHWREVVEIVSMAGFgeyGKTNVQCKNRIDTVKKRYKQEKTRKAAG--GGPSSWVFFEKLD 100
                     67778888999****************6666533389************************98..55667******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1436102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEEDDEIPPA TFHLPDVSAL TPLAQAEAEV GGGWNTGNLK YEHWREVVEI VSMAGFGEYG  60
KTNVQCKNRI DTVKKRYKQE KTRKAAGGGP SSWVFFEKLD RLIGATANFP SSGCGRRRGE  120
SFQKVPMGIH TNSRSNLYQR QMEQQALVKR CSKSTPRQFR SESDSETSGD SEDSLPPPLM  180
LPPEKRFKID KMGGGREMTE LARATLRFIE VYEKAEREKL KQTAEMEKER MKFLKEIESQ  240
RMQFLKAHME ITQIKLEIMK MKNM
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535231.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535231.10.0PREDICTED: trihelix transcription factor ASIL1-like
SwissprotQ9SYG23e-47ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A0D3BB811e-55A0A0D3BB81_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B6W91e-55A0A3P6B6W9_BRAOL; Uncharacterized protein
STRINGXP_010535231.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.11e-446B-interacting protein 1-like 1