PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535230.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 261aa    MW: 29421 Da    PI: 8.7184
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.81e-1151135186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li++  e+   l+rg lk  +W+ev++ ++  gf    ++ + Ck+k++ ++kryk++k+++  +  +  s++ +f++l+
  XP_010535230.1  51 CWSEAATAVLIDVWGER--FLSRGILKYEHWREVAEIVSMAGFgeyGKTDVHCKNKIDTVKKRYKQEKARKAAG--GGPSSWIFFEKLD 135
                     7***********99875..4778999************666653337899**********************98..55667******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-2249137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEEDDEIPPA TFHLPDFSTL TPLTQAEAEV GGGWNTGNVI ASGCGGGRED CWSEAATAVL  60
IDVWGERFLS RGILKYEHWR EVAEIVSMAG FGEYGKTDVH CKNKIDTVKK RYKQEKARKA  120
AGGGPSSWIF FEKLDRLIGA TANFPSSDRG RRRGESFQKV PMGIRTNSRS NLYQCQTEQQ  180
ALVRRCSEST PRQFRSESES ETSGDSEDSL PPPRMLPPEK RFKIDKMGGG REMTELARAT  240
LRFIEAYEKA ESKRRRWRRS G
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535230.10.0PREDICTED: trihelix transcription factor ASIL1-like
SwissprotQ9LJG81e-54ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A178V8Z73e-52A0A178V8Z7_ARATH; ASIL2
STRINGXP_010535230.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-53sequence-specific DNA binding transcription factors