PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534754.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 331aa    MW: 38545.9 Da    PI: 6.9639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix104.57.9e-33170255187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++ev aLi++r+++e +++++  k+ lWee+s  m++ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  XP_010534754.1 170 RWPRDEVEALIRLRTNVEANYQENGTKGSLWEEISTGMQSLGYSRSAKRCKEKWENINKYFKKVKESNKKR-PVDSKTCPYFHQLEA 255
                     8*********************************************************************8.9999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0035167229IPR001005SANT/Myb domain
PfamPF138371.7E-23169256No hitNo description
PROSITE profilePS500907.503169227IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-4169226IPR009057Homeodomain-like
CDDcd122035.82E-24170234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
NVPSLNLFSS STSSSTASEE EEEGKRLRKR RRYWKGLLKR LTNDLMEKQE EMQKRFLETL  60
EKREKERIER EQAWRVQETA RINREYEIIA HERSASAAKD AAIISFLQKV SRQQQQQQHL  120
QKQKHTQQQT REDHSLAFLN DQKHETRIVE AASKTSNSDS SYMLSPSSSR WPRDEVEALI  180
RLRTNVEANY QENGTKGSLW EEISTGMQSL GYSRSAKRCK EKWENINKYF KKVKESNKKR  240
PVDSKTCPYF HQLEAIHKEK NTNPTLPLMA APQQLLLLPQ ETIDEPDKHK MGDEEGDKEE  300
DEEEGDNETG GFETVLNKTC SPVDINNNVF A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12731RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534754.20.0PREDICTED: trihelix transcription factor GT-2-like, partial
SwissprotQ391171e-118TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTY01e-122D7KTY0_ARALL; Uncharacterized protein
STRINGXP_010534754.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-65Trihelix family protein