PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533628.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 165aa    MW: 18154.6 Da    PI: 9.6309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.8e-3385143159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r+a+dp+++++tYeg Hnh+
  XP_010533628.1  85 LDDGYRWRKYGQKSVKNNAHPRSYYRCTYQTCNVKKQVQREAKDPSIIVTTYEGIHNHP 143
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3372143IPR003657WRKY domain
SuperFamilySSF1182901.57E-2879144IPR003657WRKY domain
PROSITE profilePS5081129.01180145IPR003657WRKY domain
SMARTSM007742.0E-3885144IPR003657WRKY domain
PfamPF031065.0E-2786143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEGGDPMLTL ENPLTSSFEK TLMMMAPLSG GNEGASSSFS PVNFPAPAPE NVGGGAGVKS  60
NKGKGKGSAA TPRIAFHTRS VDDVLDDGYR WRKYGQKSVK NNAHPRSYYR CTYQTCNVKK  120
QVQREAKDPS IIVTTYEGIH NHPCEKLMET LSPLLRQLQF LSRVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2575142774Probable WRKY transcription factor 4
2lex_A1e-2575142774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533628.11e-123PREDICTED: probable WRKY transcription factor 56
SwissprotQ8VWQ48e-74WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A078GJZ72e-76A0A078GJZ7_BRANA; BnaC09g11790D protein
STRINGXP_010533628.11e-122(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-69WRKY DNA-binding protein 56