PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 225aa MW: 25369.5 Da PI: 8.4699 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 70 | 113 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE++l++++ ++lG+g+Wk Ia + k+R+ q+ s+ qk+ XP_010533429.1 70 WTEEEHQLFLEGLEKLGKGDWKGIATRYVKTRSSTQVASHAQKH 113 ******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.925 | 62 | 118 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-17 | 63 | 119 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-16 | 65 | 117 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.5E-11 | 66 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 69 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.26E-11 | 70 | 114 | No hit | No description |
Pfam | PF00249 | 1.4E-12 | 70 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSENTEPGQI GDTREPFRGG VKIFGVYLTE ETKQVRDGDN TVSSVGLEDS EIGSCDCEPP 60 LKRRNKGVIW TEEEHQLFLE GLEKLGKGDW KGIATRYVKT RSSTQVASHA QKHFIRQEKP 120 DQKKQRRSIF DTPFCSETRS PRDSEVANPS GGTPSLPQQK ACVSTSGSTV TTNNGINSYA 180 LPMWPRPMGV KQVNSLEYMW GYPCYRMFEF MAPFVPSSAR IERRH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533429.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533429.1 | 1e-169 | PREDICTED: myb-like protein I | ||||
Refseq | XP_010537287.1 | 1e-169 | PREDICTED: myb-like protein I | ||||
STRING | XP_010533429.1 | 1e-169 | (Tarenaya hassleriana) | ||||
STRING | XP_010537287.1 | 1e-169 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 7e-19 | MYB_related family protein |