PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533389.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 276aa    MW: 31532.3 Da    PI: 9.9847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172064247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     g W + Ed++l ++v+q+G+ +W++Ia +++ gR++k+c++rw++ 
   XP_010533389.1 20 GHWRPAEDQKLRRLVEQYGPQNWNSIADKLQ-GRSGKSCRLRWFNQ 64
                     67*****************************.***********996 PP
2Myb_DNA-binding62.11.1e-1971115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ +
   XP_010533389.1  71 RGPFTEEEEEKLIAAHRIHGNK-WSFIARLFP-GRTDNAVKNHWHVL 115
                      89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5011465IPR017930Myb domain
SMARTSM007171.3E-141867IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-2919112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-282072IPR009057Homeodomain-like
CDDcd001673.16E-132263No hitNo description
PfamPF139214.1E-172282No hitNo description
PROSITE profilePS5129429.21266120IPR017930Myb domain
SMARTSM007173.7E-1770118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2373119IPR009057Homeodomain-like
CDDcd001671.43E-1273116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEDDSCNSNN TTSSSVSRGG HWRPAEDQKL RRLVEQYGPQ NWNSIADKLQ GRSGKSCRLR  60
WFNQLDPRIN RGPFTEEEEE KLIAAHRIHG NKWSFIARLF PGRTDNAVKN HWHVLMARKQ  120
RERSKRCVKI TPKTATHHPD NDNPGNVIVP SGKSRIGFEG KTTIFEAWNP TSKDQEQVCR  180
ASSLFPRTYY GINCLGSNAF LEIRNRKMTV SGPLGYHKDA TKPNKMDQIT KFRDNMPVWV  240
STRMDLRQEQ GASEGEESST RENESAPFID FLGVGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31201198107B-MYB
1gv2_A3e-31201195104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-302011959158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-302011959158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-31201195104C-Myb DNA-Binding Domain
1msf_C3e-31201195104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533389.10.0PREDICTED: trichome differentiation protein GL1-like
TrEMBLA0A067H7L15e-75A0A067H7L1_CITSI; Uncharacterized protein
TrEMBLA0A2H5PI505e-75A0A2H5PI50_CITUN; Uncharacterized protein
TrEMBLV4TD415e-75V4TD41_9ROSI; Uncharacterized protein
STRINGXP_010533389.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16592913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-65myb domain protein 52