PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533151.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

YABBY

Protein Properties

Length: 174aa MW: 19460.1 Da PI: 8.9494

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	202.4	1.7e-62	10	163	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ + + + + ++ ++ s+s+ +++ XP_010533151.1 10 ATASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-------------QAPNYGIPEYRNEYGSSSRCHNK 91 5789****************************************9998888876663.............23333344444444444444444 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ ++++v ++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_010533151.1 92 VPSSRVSTRNVGEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163 44456667777777789***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.3E-70	12	163	IPR006780	YABBY protein
SuperFamily	SSF47095	4.32E-8	108	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	110	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MAGCLDAATA TASEQLCYIP CNFCNIVLAV SVPCSSLFDI VTVRCGHCTN LWSVNMAAAL 60 QSLSRPNFQA PNYGIPEYRN EYGSSSRCHN KVPSSRVSTR NVGEQRIVNR PPEKRQRVPS 120 AYNQFIKEEI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLENNKH AKLA

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533151.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119091	8e-67	AK119091.1 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19.
GenBank	BT003734	8e-67	BT003734.1 Arabidopsis thaliana At2g26580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533151.1	1e-128	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	1e-104	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	R0FYE4	1e-102	R0FYE4_9BRAS; Uncharacterized protein
STRING	XP_010533151.1	1e-128	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-106	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]