PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 38524.8 Da PI: 6.0388 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed l ++++ +G g W+t +++ g++R++k+c++rw +yl XP_010533040.1 14 RGAWTAQEDNTLREYIRTHGEGKWSTLPKKSGLKRCGKSCRLRWKNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.8e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ XP_010533040.1 67 RGNISPDEEELIVRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNS 110 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.862 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.32E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.512 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.63E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGRRSCCAKE GLNRGAWTAQ EDNTLREYIR THGEGKWSTL PKKSGLKRCG KSCRLRWKNY 60 LKPDIKRGNI SPDEEELIVR LHNLLGNRWS LIAGRLPGRT DNEIKNHWNS SLRKRLQHGQ 120 EKTRVPCQNR SKHRKQMTVL SDQADDLVTE PPLSSRNIIN GDNNAGVIRT KAVKCTKTLV 180 LPDLPPLHHQ SDTTSPLPNP EQEQERERER EQEQEREQER EQDQERGHEQ EQERSREFGE 240 VAKNVAMDEG SALLRDLMSD FDRFESEFIF SEFMDFDVLE GGNLKSLVSS EEMLQDWGHD 300 ESVQVNLDLN RPFTSNLDRD DDGEDWFGHK VK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533040.1 | 0.0 | PREDICTED: transcription factor TT2 isoform X2 | ||||
Swissprot | Q9FJA2 | 2e-93 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | D7MHT1 | 2e-91 | D7MHT1_ARALL; Uncharacterized protein | ||||
STRING | XP_010533039.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-93 | MYB family protein |