PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532819.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 299aa    MW: 34226.3 Da    PI: 9.4827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-182168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++v+++G g+W+++ar  g++R +k+c++rw +yl
   XP_010532819.1 21 KGPWTSEEDRLLMEYVRLHGEGRWNSVARLSGLKRNGKSCRLRWVNYL 68
                     79********************************************97 PP
2Myb_DNA-binding52.41.2e-1674118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_010532819.1  74 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2491668IPR017930Myb domain
SuperFamilySSF466895.14E-3018115IPR009057Homeodomain-like
SMARTSM007172.4E-152070IPR001005SANT/Myb domain
PfamPF002492.1E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-232275IPR009057Homeodomain-like
CDDcd001677.22E-112368No hitNo description
PROSITE profilePS5129424.75969123IPR017930Myb domain
SMARTSM007173.9E-1573121IPR001005SANT/Myb domain
PfamPF002497.1E-1474118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2476122IPR009057Homeodomain-like
CDDcd001671.33E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSSWGGGHVA GWGVVEEGWR KGPWTSEEDR LLMEYVRLHG EGRWNSVARL SGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPH EESIILELHA KWGNRWSTIA RSLPGRTDNE IKNYWRTHFK  120
KKAKSPASNV EKTKNRLLKR QQFQQQRQME MMQQQQQLFR FNQLHMKKII SLLEDDNNNN  180
NMDSSNSNSS SSSSDSNYAV YVPQMAPQTT ATGTTSAYAP NATEEQLQVH HYQTNNGYWP  240
AVHQMTVPEA AMYEDNALWD GLWNFDAEGN GNFGVSPAMA TVTCGARKAC FHNLVTPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-262112327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532819.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532819.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLR0GP771e-123R0GP77_9BRAS; Uncharacterized protein
STRINGXP_010532819.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.18e-98myb domain protein 305