PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010532819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 34226.3 Da PI: 9.4827 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++v+++G g+W+++ar g++R +k+c++rw +yl XP_010532819.1 21 KGPWTSEEDRLLMEYVRLHGEGRWNSVARLSGLKRNGKSCRLRWVNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_010532819.1 74 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.249 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-30 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.22E-11 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 24.759 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 74 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-10 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MSSWGGGHVA GWGVVEEGWR KGPWTSEEDR LLMEYVRLHG EGRWNSVARL SGLKRNGKSC 60 RLRWVNYLRP DLKRGQITPH EESIILELHA KWGNRWSTIA RSLPGRTDNE IKNYWRTHFK 120 KKAKSPASNV EKTKNRLLKR QQFQQQRQME MMQQQQQLFR FNQLHMKKII SLLEDDNNNN 180 NMDSSNSNSS SSSSDSNYAV YVPQMAPQTT ATGTTSAYAP NATEEQLQVH HYQTNNGYWP 240 AVHQMTVPEA AMYEDNALWD GLWNFDAEGN GNFGVSPAMA TVTCGARKAC FHNLVTPFC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 21 | 123 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010532819.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010532819.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | R0GP77 | 1e-123 | R0GP77_9BRAS; Uncharacterized protein | ||||
STRING | XP_010532819.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24310.1 | 8e-98 | myb domain protein 305 |