PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532588.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 479aa    MW: 52866.8 Da    PI: 8.9827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079423445123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_010532588.1 423 HECPICFRVFKSGQALGGHKRSH 445
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-6534IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.25E-8731No hitNo description
PfamPF139129.5E-5932IPR007087Zinc finger, C2H2
SMARTSM003550.26931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.51936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-880107No hitNo description
PfamPF139121.1E-485109IPR007087Zinc finger, C2H2
SMARTSM003550.2985107IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-485109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9985112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
PfamPF139124.1E-10423445IPR007087Zinc finger, C2H2
SMARTSM003550.14423445IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974423445IPR007087Zinc finger, C2H2
PROSITE patternPS000280425445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEQNRERNFV CKFCSKRFSC GKSLGGHIRT HMNENSVDSN EDEASKLKIS DNGGQSSYGL  60
RENPKKNKRF ADRTEMNSLK QQQLFLCREC GKGFSALKAL CGHMACHSDR EKVVMDSQSD  120
TETSSAPIRR RSKRVTKPHK AFVLGDVNQS SSVSFANGNS SSVSEIEQEQ EELALCLMML  180
SKDSSFRKAH NLGNSLGESS DNNSVILETK SLSSGDLKIV NVKDAGEFCC NADEILGAKK  240
LGNHSQSRSA EDNDVLLDDS DNSDSGYFRN GPKKADSDVS VDGFLRNTGS NKAVIESGSV  300
FSNSPAKQDK NLNRLRNAVE LRKEWYKEGR TGRSATKYDL RKKGKRVCSN SRKKMKYEFN  360
ANGFNESVND SGENSLEADS CSDTNQNTPG ESKIHQGRRS SKATTAAATC SKKPNAKKKS  420
KGHECPICFR VFKSGQALGG HKRSHFIGSH ENSTVVIRQE VTEMHHTMID LNLPAPVDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340353RKKGKRVCSNSRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532588.10.0PREDICTED: uncharacterized protein LOC104808577
TrEMBLQ9FZE50.0Q9FZE5_ARATH; C2H2-like zinc finger protein
STRINGXP_010532588.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-166C2H2-like zinc finger protein