PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532433.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 275aa    MW: 30898.8 Da    PI: 6.9215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-1234122298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +kv +   + + + l +p +f++  g  ++ s t+tle+++g + +++l  ++  g++++++GW+eF++   ++ g  + F ++g+s+f   v++
  XP_010532433.1  34 VKVVLDLTMES-KTLKIPPRFVK-AG--PKLSDTVTLETPTGFKHKIQL--KRVNGEVWFQDGWSEFAERYSIRKGHLLFFDFQGDSTF--GVRI 120
                     55555555555.56********4.44..44778****************..999999**************************999888..8888 PP

                     E- CS
              B3  97 fr 98 
                     f+
  XP_010532433.1 121 FD 122
                     76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-1629124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-1830124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39232124IPR003340B3 DNA binding domain
SMARTSM010196.1E-1033124IPR003340B3 DNA binding domain
CDDcd100171.59E-1433122No hitNo description
PfamPF023627.2E-1033122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVSTRRRRVG LNSDPLRRPP PSRKTHLPPV SQFVKVVLDL TMESKTLKIP PRFVKAGPKL  60
SDTVTLETPT GFKHKIQLKR VNGEVWFQDG WSEFAERYSI RKGHLLFFDF QGDSTFGVRI  120
FDMSATEAEY ESNDEMEEGE CDGSLGSQGS EEEENDTIDV LDGLVDIDVK PASASNPRSS  180
SNKCKKNIGL TNDSDVEVID LDKFLCNTTP SKKRNEGKSR NTRSKIAITR NTRGQTAKSL  240
CDGADLMDIE VLEEDQIPHK QEFSLTRCRG KKLSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532433.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532433.10.0PREDICTED: B3 domain-containing protein At3g18960
STRINGXP_010532433.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-39B3 family protein