PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010532298.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 28254.7 Da PI: 7.6284 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 102 | 146 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I+r + k+Rt+ q+ s+ qky XP_010532298.1 102 PWTEEEHKLFLLGLQKAGKGDWKGISRNFVKTRTPAQVASHAQKY 146 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.605 | 95 | 151 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-17 | 97 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-17 | 98 | 150 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.8E-8 | 99 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-11 | 102 | 146 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 102 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.66E-9 | 102 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MADGDSSSSD ISGGGVGFGG ARKEIMLFGV RLVVDPMRKC VSLNNLSEYE QPEEMPKKIG 60 GEDGDGEQKN KVDIATGYAS ADDAVPISSS SGGNRERKRG IPWTEEEHKL FLLGLQKAGK 120 GDWKGISRNF VKTRTPAQVA SHAQKYFLRQ SNLNRRRRRS SLFDMTTETV KMPMEEHQLL 180 TQENSTAIPL LNPTHGPTSH WAPFNLNTDR NPGLSFPPIS LNLSLASPCL KDPSSNPSAF 240 EMMPRFSGGD SSSSIIDVA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00149 | DAP | Transfer from AT1G19000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010532298.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010532298.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 1e-59 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | E4MX29 | 2e-79 | E4MX29_EUTHA; mRNA, clone: RTFL01-16-O16 | ||||
TrEMBL | V4KXY1 | 2e-79 | V4KXY1_EUTSA; Uncharacterized protein | ||||
STRING | XP_010532298.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2461 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19000.2 | 8e-75 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|