PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010530889.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 20222.8 Da PI: 9.4704 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.5e-17 | 130 | 173 | 2 | 49 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 gy+GVr+++ +g+++AeIrdp+ r +r++lg+f tae Aa+a++ + XP_010530889.1 130 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEAAARAYDLM 173 8********.**********83....57*******************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-12 | 130 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 130 | 177 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-16 | 130 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.298 | 130 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-24 | 131 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 131 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.48E-22 | 131 | 178 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MQYPDNRSEF AGAQHIYPTW IRYPVPDQWP RQEQELSAIV STLKHVISGD ETAPFPCFSD 60 QSTVIGAGMP RSDTDTCQVC KIDGCLGCNY FFPPNQRIEE REGGKQSAGA KRTTQAENGK 120 IRKRRSKKNG YRGVRQRPWG KFAAEIRDPK RATRVWLGTF ETAEAAARAY DLMSVEFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-17 | 126 | 178 | 1 | 54 | ATERF1 |
3gcc_A | 6e-17 | 126 | 178 | 1 | 54 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010530889.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010530889.1 | 1e-132 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 2e-58 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A078IAL9 | 2e-69 | A0A078IAL9_BRANA; BnaC03g66140D protein | ||||
TrEMBL | A0A0D3BLE7 | 2e-69 | A0A0D3BLE7_BRAOL; Uncharacterized protein | ||||
STRING | XP_010530889.1 | 1e-132 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 9e-61 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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