PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530864.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 282aa    MW: 32567.4 Da    PI: 9.0933
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.9e-161199197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ffkv     + +s++l lp  f++ + ++   s t +++++sg+sW+v +  ++++g   +++GW +Fv++n+Lk  +f+vF ++   +f  +v+++
  XP_010530864.1 11 FFKVY--IPHINSKILHLPLGFVRYIPQP--HSDTAIIRNQSGNSWRVGF--TRRDGFACFESGWADFVRDNELKPSEFMVFVYKAPCTF--LVSIY 99
                    77777..55677788********666544..5669***************..*******************************9876666..77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-226104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-197102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.219102IPR003340B3 DNA binding domain
CDDcd100171.08E-16999No hitNo description
PfamPF023621.3E-131198IPR003340B3 DNA binding domain
SMARTSM010193.7E-1811102IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-10183280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-8184280IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0034188281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MADKKVQRPE FFKVYIPHIN SKILHLPLGF VRYIPQPHSD TAIIRNQSGN SWRVGFTRRD  60
GFACFESGWA DFVRDNELKP SEFMVFVYKA PCTFLVSIYG VSTCREKRGQ VAICEILRDD  120
EEDESETSDE EFVPQQTPRS IKLGKCKMGL EKGKSRRPLQ VGQGSSARPE AGPAVEPELY  180
LDNPSNLFFV TGLKNRNFEL LVPSRLMKDF NLKFSENLTF IDPIGTIPAR RARWRDNRVC  240
LKEWTRVCRR NNLKAEDKVI CELKKTGHEV ESIKVHIIRK EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-141010410104At1g16640
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530864.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530864.10.0PREDICTED: B3 domain-containing protein REM21
STRINGXP_010530864.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-52B3 family protein