PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530782.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 284aa    MW: 33000.8 Da    PI: 8.5574
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1721981497
                    T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    +++ lp +f  ++ ++ + +  ++++++sg+ W+v++  +++ ++ ++++GWk F+++n+L++g+f+vF+++    ++++v+++
  XP_010530782.1 21 DLMNLPQSFS-RY-LPRPLPERVIIKNSSGNFWRVRV--KGRNQSAYFASGWKTFAQDNNLRAGEFMVFEYK--PPATFHVSIY 98
                    6789999998.66.34457778***************..999999*************************86..4555588775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.1158101IPR003340B3 DNA binding domain
SMARTSM010199.7E-1611101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-2111101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2211103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-171898No hitNo description
PfamPF023621.0E-142197IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-8185271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-6185281IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MATNNDARLE FFMPYLPYPS DLMNLPQSFS RYLPRPLPER VIIKNSSGNF WRVRVKGRNQ  60
SAYFASGWKT FAQDNNLRAG EFMVFEYKPP ATFHVSIYGL SSCREKRAQV EIQEISEEED  120
VIEAGDSNDI CSPLMEEDIS DEDFLMDTTI PESITKLQIG GKKGQGASSK RKGLVVENPE  180
RYLDDPTNPF FVTELKNRKF ELLVPTQMVR DCNLRFSKTI RFIDEFPSEK LEGKRVPWKD  240
KRVCINRWAR VCRRNKIKPE DKIICELLRE QGTVYAIKIH IIRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1551035104At1g16640
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530782.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530782.10.0PREDICTED: B3 domain-containing protein REM21-like
STRINGXP_010530782.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.18e-65B3 family protein