PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010530689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 25494.2 Da PI: 10.3105 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.4 | 1.6e-22 | 24 | 67 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i+ +s rqvtfskRr+g++KKA+EL++LC+ae+a+i+fs+ k XP_010530689.1 24 KIQKESHRQVTFSKRRAGLFKKASELCTLCGAEIAIIVFSPAKK 67 68999***********************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.983 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-30 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-27 | 16 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.78E-32 | 16 | 83 | No hit | No description |
PRINTS | PR00404 | 1.4E-17 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-17 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-17 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTVAAVKNNS KKGSIGRQRI PMAKIQKESH RQVTFSKRRA GLFKKASELC TLCGAEIAII 60 VFSPAKKPFS FGHPNVESVL DRYISKNRSV SFTQTQTQTQ TQTQGSGDSD LNARLTQVLS 120 ELEAEKKKGQ VMEEMRKGRT RKNWWESPLE EMSLEHLMQM KSALEELSKS VLMTKRSLAV 180 MMTAAAAAEA GSAASAAAFG CYETKVTPYH MNMMGSSSGI SSAYSFGYGH GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-16 | 16 | 87 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-16 | 15 | 87 | 1 | 73 | MEF2C |
5f28_B | 4e-16 | 15 | 87 | 1 | 73 | MEF2C |
5f28_C | 4e-16 | 15 | 87 | 1 | 73 | MEF2C |
5f28_D | 4e-16 | 15 | 87 | 1 | 73 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 180 | TKRSLAVM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010530689.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010530689.1 | 1e-174 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-78 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | V4LLZ6 | 3e-82 | V4LLZ6_EUTSA; Uncharacterized protein | ||||
STRING | XP_010530689.1 | 1e-173 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-71 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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