PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530548.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 316aa    MW: 35361.9 Da    PI: 8.4855
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.6e-40139215177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +CqvegC++dls+ k yhr+h+vCe hsk p+v+v+gle rfCqqCsrfh lsefDe+krsCr+rL++hn+rrrk+q
  XP_010530548.1 139 RCQVEGCDMDLSSSKGYHRKHRVCESHSKYPKVIVDGLECRFCQQCSRFHVLSEFDEKKRSCRKRLSHHNARRRKPQ 215
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-35133201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.197137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-38138218IPR004333Transcription factor, SBP-box
PfamPF031101.2E-31140213IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDCNMRSPMQ WDWENYLTMC KDQQLSVEWE IEGIESVFPC FSSSSSDSAS LSPGVRTCHK  60
LASESIPEDS CSIIEFGQVK ASSPAQSFLG LKLGKKRTYR DDFCGGNNNN DVSPLSMKLI  120
PSVMTEKSKP SGPSVQVPRC QVEGCDMDLS SSKGYHRKHR VCESHSKYPK VIVDGLECRF  180
CQQCSRFHVL SEFDEKKRSC RKRLSHHNAR RRKPQGTYPL NPAIIYERRQ QCTNVLSFNT  240
RSEQMYAWGA SQANSGFTLS LQSAIGFSSG KSSIISFQLP GKGGVNDAQD HHALSLLSTT  300
SSEARSDRLP IQPCRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-251402131184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195212KKRSCRKRLSHHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530548.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530548.10.0PREDICTED: squamosa promoter-binding-like protein 11
SwissprotQ9FZK03e-96SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBLR0GPP41e-100R0GPP4_9BRAS; Uncharacterized protein
STRINGXP_010530548.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.42e-91squamosa promoter-like 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Stief A, et al.
    Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.
    Plant Cell, 2014. 26(4): p. 1792-1807
    [PMID:24769482]
  3. Liu J, et al.
    The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.
    PLoS Pathog., 2015. 11(2): p. e1004629
    [PMID:25658451]
  4. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]