PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010530124.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ZF-HD | ||||||||
Protein Properties | Length: 225aa MW: 24502.2 Da PI: 7.6298 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109.9 | 1.4e-34 | 45 | 100 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhA+s+GghavDGCgEfmps geegt ++lkCaACgCHRnFHR+e+++ XP_010530124.1 45 AVRYRECLKNHAVSIGGHAVDGCGEFMPS-GEEGTLESLKCAACGCHRNFHRKETDT 100 69**************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-23 | 46 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.5E-32 | 46 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.6E-32 | 47 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.332 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.61E-21 | 148 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-31 | 150 | 224 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-26 | 162 | 219 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDFEEQAEEM EMSGVPHGGY DSLSNSSSGR PRMAGEGATS SGGGAVRYRE CLKNHAVSIG 60 GHAVDGCGEF MPSGEEGTLE SLKCAACGCH RNFHRKETDT TANATANANA VFHHQFPPYY 120 RPPPPGYLHH PHRPFALPVA AADEDDASNP SSSGGGGGGT SRKRFRTKFT AEQKEKMLWF 180 AEKLGWRIQR HDDAAVEQFC AETGVKRNVL KIWMHNNKNT LGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-32 | 163 | 220 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010530124.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019057686.1 | 1e-138 | PREDICTED: zinc-finger homeodomain protein 2 isoform X1 | ||||
Refseq | XP_019057687.1 | 1e-138 | PREDICTED: zinc-finger homeodomain protein 2 isoform X2 | ||||
Swissprot | Q9SB61 | 1e-92 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | R0FAW7 | 2e-91 | R0FAW7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010530124.1 | 1e-169 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 6e-82 | homeobox protein 22 |
Publications ? help Back to Top | |||
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