PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530022.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 213aa    MW: 23498.1 Da    PI: 4.9228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-054365123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010530022.1 43 YTCNFCRREFRSAQALGGHMNVH 65
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-64070No hitNo description
Gene3DG3DSA:3.30.160.609.6E-44167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00734365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MWNPRNYHKK DDWEDDDESW EVKAFEQDMK GNMAGTTWPP RSYTCNFCRR EFRSAQALGG  60
HMNVHRRDRA ARAPTPPAAR ACNSCAPPFP TLVIQPTAES LCHFYQLPNP SGIFGNSGDV  120
SLSGAIGATS SPDSNALFPS CNLGFSQLGF PEDMPRLLES SDGDKNLRSI DHIGETCFDL  180
NGLSKNNFKE TCTAVEEPDL ELRLGQKDSA APP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-133865229superman protein
2l1o_A6e-133865229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530022.11e-159PREDICTED: zinc finger protein 7-like isoform X1
TrEMBLD7MDE22e-63D7MDE2_ARALL; Nucleic acid binding protein
STRINGXP_010530022.11e-159(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-53C2H2 family protein