PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529811.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 288aa    MW: 32309.9 Da    PI: 7.981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152951123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010529811.1 29 YTCSFCRREFRSAQALGGHMNVH 51
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-62655No hitNo description
SMARTSM003550.00612951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2192956IPR007087Zinc finger, C2H2
PfamPF139121.9E-52952IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEKSNGSSWE ELAFAEDDAA GSMWPPRSYT CSFCRREFRS AQALGGHMNV HRRDRAKLKQ  60
TAEEDDSNND IRRYVLPSSR KDDDLREESC YTLVFNPNPN LYYEPQRSCV IDLSASSPYL  120
ASSRVSGLPR KEGSSSSSSS SSCFHIERSK NSKKVLSTSA VSFGEDTKRY KLSDQFPVLG  180
RDKKRKIERD VSENGCRTKL DIVKDANLSV SLNLVIHGSI LPVEEERDSS CKRRRRLESS  240
PQPSISITGF SCKNDIAIAR DDGTIQRANP LEDLDLELRL GADPTRGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-142451229superman protein
2l1o_A5e-142451229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159RRDRAKLKQ
2231236KRRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529811.10.0PREDICTED: transcriptional regulator SUPERMAN
SwissprotO809422e-78ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A1J3EQ523e-85A0A1J3EQ52_NOCCA; Putative transcriptional regulator RABBIT EARS
STRINGXP_010529811.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-78zinc-finger protein 10